Hmm... wala naman nakalagay na local right?
Allow me to share this anyway so that local stores can learn and improve.
My favorite by far is Ishibashi Shibuya branch. When you buy a guitar, they will change the strings to a new set of D'Addarios (your choice of gauge), setup the guitar, clean/condition the fretboard, clean all electrical contacts, and polish the body. They even know that if you're taking the guitar on a plane, they will detune it to prevent neck issues (strings contract in cold cabin temp). They take their time to do this even if the store is full of customers. Then all new guitar purchases come with free tuner (Greco), fretboard cleaner, guitar polish, and a basic black Ernie Ball strap. The Japanese attention to detail is really remarkable. I'll gladly pay the premium to get this kind of service.
I hope that all local stores follow this model. I can live without the freebies... its the service and knowledge that counts. Seeing that all their staff are trained technicians, and that you are treated properly (hindi nagmamadali sa asikaso) even if the store is full gives the customer confidence to buy.
Sa local, I like Audiophile Eaton branch. Because its an isolated (not much foot traffic) branch, I got to test any guitar I wanted without being rushed.